AI in health: keeping the human in the loop.
Author(s): Bakken, Suzanne
DOI: 10.1093/jamia/ocad091
Author(s): Bakken, Suzanne
DOI: 10.1093/jamia/ocad091
The impacts of missing data in comparative effectiveness research (CER) using electronic health records (EHRs) may vary depending on the type and pattern of missing data. In this study, we aimed to quantify these impacts and compare the performance of different imputation methods.
Author(s): Zhou, Yizhao, Shi, Jiasheng, Stein, Ronen, Liu, Xiaokang, Baldassano, Robert N, Forrest, Christopher B, Chen, Yong, Huang, Jing
DOI: 10.1093/jamia/ocad066
Author(s): Bakken, Suzanne
DOI: 10.1093/jamia/ocad076
We propose a system, quEHRy, to retrieve precise, interpretable answers to natural language questions from structured data in electronic health records (EHRs).
Author(s): Soni, Sarvesh, Datta, Surabhi, Roberts, Kirk
DOI: 10.1093/jamia/ocad050
Clinical encounter data are heterogeneous and vary greatly from institution to institution. These problems of variance affect interpretability and usability of clinical encounter data for analysis. These problems are magnified when multisite electronic health record (EHR) data are networked together. This article presents a novel, generalizable method for resolving encounter heterogeneity for analysis by combining related atomic encounters into composite "macrovisits."
Author(s): Leese, Peter, Anand, Adit, Girvin, Andrew, Manna, Amin, Patel, Saaya, Yoo, Yun Jae, Wong, Rachel, Haendel, Melissa, Chute, Christopher G, Bennett, Tellen, Hajagos, Janos, Pfaff, Emily, Moffitt, Richard
DOI: 10.1093/jamia/ocad057
The objective was to develop a dataset definition, information model, and FHIR® specification for key data elements contained in a German molecular genomics (MolGen) report to facilitate genomic and phenotype integration in electronic health records.
Author(s): Stellmach, Caroline, Sass, Julian, Auber, Bernd, Boeker, Martin, Wienker, Thomas, Heidel, Andrew J, Benary, Manuela, Schumacher, Simon, Ossowski, Stephan, Klauschen, Frederick, Möller, Yvonne, Schmutzler, Rita, Ustjanzew, Arsenij, Werner, Patrick, Tomczak, Aurelie, Hölter, Thimo, Thun, Sylvia
DOI: 10.1093/jamia/ocad061
To study the coverage and challenges in mapping 3 national and international procedure coding systems to the International Classification of Health Interventions (ICHI).
Author(s): Fung, Kin Wah, Xu, Julia, Ameye, Filip, Burelle, Lisa, MacNeil, Janice
DOI: 10.1093/jamia/ocad064
Severe infection can lead to organ dysfunction and sepsis. Identifying subphenotypes of infected patients is essential for personalized management. It is unknown how different time series clustering algorithms compare in identifying these subphenotypes.
Author(s): Bhavani, Sivasubramanium V, Xiong, Li, Pius, Abish, Semler, Matthew, Qian, Edward T, Verhoef, Philip A, Robichaux, Chad, Coopersmith, Craig M, Churpek, Matthew M
DOI: 10.1093/jamia/ocad063
Compared to natural language processing research investigating suicide risk prediction with social media (SM) data, research utilizing data from clinical settings are scarce. However, the utility of models trained on SM data in text from clinical settings remains unclear. In addition, commonly used performance metrics do not directly translate to operational value in a real-world deployment. The objectives of this study were to evaluate the utility of SM-derived training data [...]
Author(s): Burkhardt, Hannah A, Ding, Xiruo, Kerbrat, Amanda, Comtois, Katherine Anne, Cohen, Trevor
DOI: 10.1093/jamia/ocad062
Deep learning (DL) has been applied in proofs of concept across biomedical imaging, including across modalities and medical specialties. Labeled data are critical to training and testing DL models, but human expert labelers are limited. In addition, DL traditionally requires copious training data, which is computationally expensive to process and iterate over. Consequently, it is useful to prioritize using those images that are most likely to improve a model's performance [...]
Author(s): Chinn, Erin, Arora, Rohit, Arnaout, Ramy, Arnaout, Rima
DOI: 10.1093/jamia/ocad055