Correction to: Measuring interpersonal firearm violence: natural language processing methods to address limitations in criminal charge data.
Author(s):
DOI: 10.1093/jamia/ocae268
Author(s):
DOI: 10.1093/jamia/ocae268
Primary care pediatricians play an important role in genetic testing, including referrals, test ordering, responding to results, assessing risk, treatment, and managing care. As genetic testing rapidly evolves to include new tests identifying patients at risk for certain conditions, alert-based clinical decision support is insufficient in assisting pediatric primary care providers in working with patients, parents, genetics, and other specialties. Supporting pediatricians in the return of these results requires addressing [...]
Author(s): Karavite, Dean, Terek, Shannon, Connolly, John J, Harr, Margaret, Muthu, Naveen, Hakonarson, Hakon, Grundmeier, Robert W
DOI: 10.1055/a-2445-9185
Data exploration in modern electronic health records (EHRs) is often aided by user-friendly graphical interfaces providing "self-service" tools for end users to extract data for quality improvement, patient safety, and research without prerequisite training in database querying. Other resources within the same institution, such as Honest Brokers, may extract data sourced from the same EHR but obtain different results leading to questions of data completeness and correctness.
Author(s): Yiu, Allen J, Stephenson, Graham, Chow, Emilie, O'Connell, Ryan
DOI: 10.1055/a-2441-3677
Commercially available large language models such as Chat Generative Pre-Trained Transformer (ChatGPT) cannot be applied to real patient data for data protection reasons. At the same time, de-identification of clinical unstructured data is a tedious and time-consuming task when done manually. Since transformer models can efficiently process and analyze large amounts of text data, our study aims to explore the impact of a large training dataset on the performance of [...]
Author(s): Arzideh, Kamyar, Baldini, Giulia, Winnekens, Philipp, Friedrich, Christoph M, Nensa, Felix, Idrissi-Yaghir, Ahmad, Hosch, René
DOI: 10.1055/a-2424-1989
The NIH All of Us Research Program (All of Us) is engaging a diverse community of more than 10 000 registered researchers using a robust engagement ecosystem model. We describe strategies used to build an ecosystem that attracts and supports a diverse and inclusive researcher community to use the All of Us dataset and provide metrics on All of Us researcher usage growth.
Author(s): Baskir, Rubin, Lee, Minnkyong, McMaster, Sydney J, Lee, Jessica, Blackburne-Proctor, Faith, Azuine, Romuladus, Mack, Nakia, Schully, Sheri D, Mendoza, Martin, Sanchez, Janeth, Crosby, Yong, Zumba, Erica, Hahn, Michael, Aspaas, Naomi, Elmi, Ahmed, Alerté, Shanté, Stewart, Elizabeth, Wilfong, Danielle, Doherty, Meag, Farrell, Margaret M, Hébert, Grace B, Hood, Sula, Thomas, Cheryl M, Murray, Debra D, Lee, Brendan, Stark, Louisa A, Lewis, Megan A, Uhrig, Jen D, Bartlett, Laura R, Rico, Edgar Gil, Falcón, Adolph, Cohn, Elizabeth, Lunn, Mitchell R, Obedin-Maliver, Juno, Cottler, Linda, Eder, Milton, Randal, Fornessa T, Karnes, Jason, Lemieux, KiTani, Lemieux, Nelson, Lemieux, Nelson, Bradley, Lilanta, Tepp, Ronnie, Wilson, Meredith, Rodriguez, Monica, Lunt, Chris, Watson, Karriem
DOI: 10.1093/jamia/ocae270
To demonstrate the potential for a centrally managed health information exchange standardized to a common data model (HIE-CDM) to facilitate semantic data flow needed to support a learning health system (LHS).
Author(s): Eisman, Aaron S, Chen, Elizabeth S, Wu, Wen-Chih, Crowley, Karen M, Aluthge, Dilum P, Brown, Katherine, Sarkar, Indra Neil
DOI: 10.1093/jamia/ocae277
Cancer diagnosis comes as a shock to many patients, and many of them feel unprepared to handle the complexity of the life-changing event, understand technicalities of the diagnostic reports, and fully engage with the clinical team regarding the personalized clinical decision-making.
Author(s): Tripathi, Arihant, Ecker, Brett, Boland, Patrick, Ghodoussipour, Saum, Riedlinger, Gregory R, De, Subhajyoti
DOI: 10.1093/jamia/ocae284
Access to firearms is associated with increased suicide risk. Our aim was to develop a natural language processing approach to characterizing firearm access in clinical records.
Author(s): Trujeque, Joshua, Dudley, R Adams, Mesfin, Nathan, Ingraham, Nicholas E, Ortiz, Isai, Bangerter, Ann, Chakraborty, Anjan, Schutte, Dalton, Yeung, Jeremy, Liu, Ying, Woodward-Abel, Alicia, Bromley, Emma, Zhang, Rui, Brenner, Lisa A, Simonetti, Joseph A
DOI: 10.1093/jamia/ocae169
SNOMED CT provides a standardized terminology for clinical concepts, allowing cohort queries over heterogeneous clinical data including Electronic Health Records (EHRs). While it is intuitive that missing and inaccurate subtype (or is-a) relations in SNOMED CT reduce the recall and precision of cohort queries, the extent of these impacts has not been formally assessed. This study fills this gap by developing quantitative metrics to measure these impacts and performing statistical [...]
Author(s): Hao, Xubing, Li, Xiaojin, Huang, Yan, Shi, Jay, Abeysinghe, Rashmie, Tao, Cui, Roberts, Kirk, Zhang, Guo-Qiang, Cui, Licong
DOI: 10.1093/jamia/ocae272
Evaluate popular explanation methods using heatmap visualizations to explain the predictions of deep neural networks for electrocardiogram (ECG) analysis and provide recommendations for selection of explanations methods.
Author(s): Storås, Andrea Marheim, Mæland, Steffen, Isaksen, Jonas L, Hicks, Steven Alexander, Thambawita, Vajira, Graff, Claus, Hammer, Hugo Lewi, Halvorsen, Pål, Riegler, Michael Alexander, Kanters, Jørgen K
DOI: 10.1093/jamia/ocae280