Advancing the application and evaluation of large language models in health and biomedicine.
Author(s): Bakken, Suzanne
DOI: 10.1093/jamia/ocaf043
Author(s): Bakken, Suzanne
DOI: 10.1093/jamia/ocaf043
The Safety Assurance Factors for Electronic Health Record (EHR) Resilience (SAFER) Guides provide recommendations to healthcare organizations for conducting proactive self-assessments of the safety and effectiveness of their EHR implementation and use. Originally released in 2014, they were last updated in 2016. In 2022, the Centers for Medicare and Medicaid Services required their annual attestation by US hospitals.
Author(s): Sittig, Dean F, Flanagan, Trisha, Sengstack, Patricia, Cholankeril, Rosann T, Ehsan, Sara, Heidemann, Amanda, Murphy, Daniel R, Salmasian, Hojjat, Adelman, Jason S, Singh, Hardeep
DOI: 10.1093/jamia/ocaf018
We developed and validated a large language model (LLM)-assisted system for conducting systematic literature reviews in health technology assessment (HTA) submissions.
Author(s): Li, Ying, Datta, Surabhi, Rastegar-Mojarad, Majid, Lee, Kyeryoung, Paek, Hunki, Glasgow, Julie, Liston, Chris, He, Long, Wang, Xiaoyan, Xu, Yingxin
DOI: 10.1093/jamia/ocaf030
The vast and complex nature of human genomic sequencing data presents challenges for effective analysis. This review aims to investigate the application of natural language processing (NLP) techniques, particularly large language models (LLMs) and transformer architectures, in deciphering genomic codes, focusing on tokenization, transformer models, and regulatory annotation prediction. The goal of this review is to assess data and model accessibility in the most recent literature, gaining a better understanding [...]
Author(s): Cheng, Shuyan, Wei, Yishu, Zhou, Yiliang, Xu, Zihan, Wright, Drew N, Liu, Jinze, Peng, Yifan
DOI: 10.1093/jamia/ocaf029
Accurate, complete allergy histories are critical for decision-making and medication prescription. However, allergy information is often spread across the electronic health record (EHR); thus, allergy lists are often inaccurate or incomplete. Discrepant allergy information can lead to suboptimal or unsafe clinical care and contribute to alert fatigue. We developed an allergy reconciliation module within Mass General Brigham (MGB)'s EHR to support accurate and intuitive reconciliation of discrepancies in the allergy [...]
Author(s): Blackley, Suzanne V, Lo, Ying-Chih, Varghese, Sheril, Chang, Frank Y, James, Oliver D, Seger, Diane L, Blumenthal, Kimberly G, Goss, Foster R, Zhou, Li
DOI: 10.1093/jamia/ocaf022
Digital health research involves collecting vast amounts of personal health data, making data management practices complex and challenging to convey during informed consent.
Author(s): McInnis, Brian J, Pindus, Ramona, Kareem, Daniah H, Cakici, Julie, Vital, Daniela G, Hekler, Eric, Nebeker, Camille
DOI: 10.1093/jamia/ocaf004
To identify distinct patterns in consumer willingness to share health data with various stakeholders and analyze characteristics across consumer groups.
Author(s): Nagappan, Ashwini, Zhu, Xi
DOI: 10.1093/jamia/ocaf014
Prediction of mortality in intensive care unit (ICU) patients typically relies on black box models (that are unacceptable for use in hospitals) or hand-tuned interpretable models (that might lead to the loss in performance). We aim to bridge the gap between these 2 categories by building on modern interpretable machine learning (ML) techniques to design interpretable mortality risk scores that are as accurate as black boxes.
Author(s): Zhu, Chloe Qinyu, Tian, Muhang, Semenova, Lesia, Liu, Jiachang, Xu, Jack, Scarpa, Joseph, Rudin, Cynthia
DOI: 10.1093/jamia/ocae318
The ICD-10-CM classification system contains more specificity than its predecessor ICD-9-CM. A stated reason for transitioning to ICD-10-CM was to increase the availability of detailed data. This study aims to determine whether the increased specificity contained in ICD-10-CM is utilized in the ambulatory care setting and inform an evidence-based approach to evaluate ICD-11 content for implementation planning in the United States.
Author(s): Fenton, Susan H, Ciminello, Cassandra, Mays, Vickie M, Stanfill, Mary H, Watzlaf, Valerie
DOI: 10.1093/jamia/ocaf003
To develop a distributed algorithm to fit multi-center Cox regression models with time-varying coefficients to facilitate privacy-preserving data integration across multiple health systems.
Author(s): Liang, C Jason, Luo, Chongliang, Kranzler, Henry R, Bian, Jiang, Chen, Yong
DOI: 10.1093/jamia/ocae313