ACIF 'Go Live' - #S1E2: Click, Click, Click

Degenerative rotator cuff tears (DCTs) are the leading cause of shoulder pain, affecting 30%-50% of individuals over 50. Current phenotyping strategies for DCT use heterogeneous combinations of procedural and diagnostic codes and are concerning for misclassification. The objective of this study was to create standardized phenotypic algorithms to classify DCT status across electronic health record (EHR) systems.
Author(s): Herzberg, Simone D, Garduno-Rapp, Nelly-Estefanie, Ong, Henry H, Gangireddy, Srushti, Chandrashekar, Anoop S, Wei, Wei-Qi, LeClere, Lance E, Wen, Wanqing, Hartmann, Katherine E, Jain, Nitin B, Giri, Ayush
DOI: 10.1093/jamiaopen/ooaf014
Despite the recent adoption of large language models (LLMs) for biomedical information extraction (IE), challenges in prompt engineering and algorithms persist, with no dedicated software available. To address this, we developed LLM-IE: a Python package for building complete IE pipelines.
Author(s): Hsu, Enshuo, Roberts, Kirk
DOI: 10.1093/jamiaopen/ooaf012
To develop and disseminate a technical framework for administering the Research Participant Perception Survey (RPPS) and aggregating data across institutions using REDCap.
Author(s): Cheng, Alex C, Bascompte Moragas, Eva, Thomas, Ellis, O'Neal, Lindsay, Harris, Paul A, Chatterjee, Ranee, Goodrich, James, Roberts, Jamie, Cheema, Sameer, Lindo, Sierra, Ford, Daniel E, Martinez, Liz, Carey, Scott, Dozier, Ann, Dykes, Carrie, Panjala, Pavithra, Wagenknecht, Lynne, Andrews, Joseph E, Shuping, Janet, Burgin, Derick, Green, Nancy S, Mohammed, Siddiq, Khoury-Shakour, Sana, Connally, Lisa, Coffran, Cameron, Qureshi, Adam, Schlesinger, Natalie, Kost, Rhonda G
DOI: 10.1093/jamiaopen/ooaf017
Sepsis recognition among infants in the Neonatal Intensive Care Unit (NICU) is challenging and delays in recognition can result in devastating consequences. Although predictive models may improve sepsis outcomes, clinical adoption has been limited. Our focus was to align model behavior with clinician information needs by developing a machine learning (ML) pipeline with two components: (1) a model to predict baseline sepsis risk and (2) a model to detect evolving [...]
Author(s): Cao, Lusha, Masino, Aaron J, Harris, Mary Catherine, Ungar, Lyle H, Shaeffer, Gerald, Fidel, Alexander, McLaurin, Elease, Srinivasan, Lakshmi, Karavite, Dean J, Grundmeier, Robert W
DOI: 10.1093/jamiaopen/ooaf015
To explore patients' use of patient portals to access lab test results, their comprehension of lab test data, and factors associated with these.
Author(s): Lustria, Mia Liza A, Aliche, Obianuju, Killian, Michael O, He, Zhe
DOI: 10.1093/jamiaopen/ooaf009
This study aimed to develop and evaluate an artificial intelligence (AI)-driven system for forecasting Pediatric Emergency Department (PED) overcrowding and optimizing physician shift schedules using machine learning operations (MLOps).
Author(s): Akbasli, Izzet Turkalp, Birbilen, Ahmet Ziya, Teksam, Ozlem
DOI: 10.1093/jamiaopen/ooae138
We conducted a scoping review to identify barriers to telehealth use and uptake from the perspective of patient, provider, and system that were documented in the literature. In addition to identifying and categorizing the barriers, we aimed to assess how barriers differed for studies conducted during the COVID-19 pandemic, as well as how barriers differed between the United States vs internationally based studies.
Author(s): Kemp, Mackenzie, Rising, Kristin L, Laynor, Gregory, Miao, Jessica, Worster, Brooke, Chang, Anna Marie, Monick, Andrew J, Guth, Amanda, Esteves Camacho, Tracy, McIntosh, Kiana, Amadio, Grace, Shughart, Lindsey, Hsiao, TingAnn, Leader, Amy E
DOI: 10.1093/jamiaopen/ooaf019
To semantically enrich the laboratory data dictionary of the Study of Health in Pomerania (SHIP), a population-based cohort study, with LOINC to achieve better compliance with the FAIR principles for data stewardship.
Author(s): Inau, Esther Thea, Radke, Dörte, Bird, Linda, Westphal, Susanne, Ittermann, Till, Schäfer, Christian, Nauck, Matthias, Zeleke, Atinkut Alamirrew, Schmidt, Carsten Oliver, Waltemath, Dagmar
DOI: 10.1093/jamiaopen/ooaf010