Informatics research to enable clinically relevant, personalized genomic medicine.
Author(s): Ohno-Machado, Lucila
DOI: 10.1136/amiajnl-2012-000844
Author(s): Ohno-Machado, Lucila
DOI: 10.1136/amiajnl-2012-000844
This report, based on a workshop jointly sponsored the National Institute of Biomedical Imaging and Biomedical Engineering and the Office of the National Coordinator for Health Information Technology, examines the role and value of images as multimedia data in electronic health records (EHRs). The workshop, attended by a wide range of stakeholders, was motivated in part by the absence of image data from discussions of meaningful use of health information [...]
Author(s): Seto, Belinda, Friedman, Charles
DOI: 10.1136/amiajnl-2011-000660
Real-time locating systems (RTLS) have the potential to enhance healthcare systems through the live tracking of assets, patients and staff. This study evaluated a commercially available RTLS system deployed in a clinical setting, with three objectives: (1) assessment of the location accuracy of the technology in a clinical setting; (2) assessment of the value of asset tracking to staff; and (3) assessment of threshold monitoring applications developed for patient tracking [...]
Author(s): Okoniewska, Barbara, Graham, Alecia, Gavrilova, Marina, Wah, Dannel, Gilgen, Jonathan, Coke, Jason, Burden, Jack, Nayyar, Shikha, Kaunda, Joseph, Yergens, Dean, Baylis, Barry, Ghali, William A, ,
DOI: 10.1136/amiajnl-2011-000560
To research computational methods for coreference resolution in the clinical narrative and build a system implementing the best methods.
Author(s): Zheng, Jiaping, Chapman, Wendy W, Miller, Timothy A, Lin, Chen, Crowley, Rebecca S, Savova, Guergana K
DOI: 10.1136/amiajnl-2011-000599
Because breast tissue composition partially predicts breast cancer risk, classification of mammography reports by breast tissue composition is important from both a scientific and clinical perspective. A method is presented for using the unstructured text of mammography reports to classify them into BI-RADS breast tissue composition categories. An algorithm that uses regular expressions to automatically determine BI-RADS breast tissue composition classes for unstructured mammography reports was developed. The algorithm assigns [...]
Author(s): Percha, Bethany, Nassif, Houssam, Lipson, Jafi, Burnside, Elizabeth, Rubin, Daniel
DOI: 10.1136/amiajnl-2011-000607
Morphologic variations of disease are often linked to underlying molecular events and patient outcome, suggesting that quantitative morphometric analysis may provide further insight into disease mechanisms. In this paper a methodology for the subclassification of disease is developed using image analysis techniques. Morphologic signatures that represent patient-specific tumor morphology are derived from the analysis of hundreds of millions of cells in digitized whole slide images. Clustering these signatures aggregates tumors [...]
Author(s): Cooper, Lee A D, Kong, Jun, Gutman, David A, Wang, Fusheng, Gao, Jingjing, Appin, Christina, Cholleti, Sharath, Pan, Tony, Sharma, Ashish, Scarpace, Lisa, Mikkelsen, Tom, Kurc, Tahsin, Moreno, Carlos S, Brat, Daniel J, Saltz, Joel H
DOI: 10.1136/amiajnl-2011-000700
Thousands of complex-disease single-nucleotide polymorphisms (SNPs) have been discovered in genome-wide association studies (GWAS). However, these intragenic SNPs have not been collectively mined to unveil the genetic architecture between complex clinical traits. The authors hypothesize that biological annotations of host genes of trait-associated SNPs may reveal the biomolecular modularity across complex-disease traits and offer insights for drug repositioning.
Author(s): Li, Haiquan, Lee, Younghee, Chen, James L, Rebman, Ellen, Li, Jianrong, Lussier, Yves A
DOI: 10.1136/amiajnl-2011-000482
In the midst of a US $30 billion USD investment in the Nationwide Health Information Network (NwHIN) and electronic health records systems, a significant change in the architecture of the NwHIN is taking place. Prior to 2010, the focus of information exchange in the NwHIN was the Regional Health Information Organization (RHIO). Since 2010, the Office of the National Coordinator (ONC) has been sponsoring policies that promote an internet-like architecture [...]
Author(s): Lenert, Leslie, Sundwall, David, Lenert, Michael Edward
DOI: 10.1136/amiajnl-2011-000442
Physicians are often unaware of the results of tests pending at discharge (TPADs). The authors designed and implemented an automated system to notify the responsible inpatient physician of the finalized results of TPADs using secure, network email. The system coordinates a series of electronic events triggered by the discharge time stamp and sends an email to the identified discharging attending physician once finalized results are available. A carbon copy is [...]
Author(s): Dalal, Anuj K, Schnipper, Jeffrey L, Poon, Eric G, Williams, Deborah H, Rossi-Roh, Kathleen, Macleay, Allison, Liang, Catherine L, Nolido, Nyryan, Budris, Jonas, Bates, David W, Roy, Christopher L
DOI: 10.1136/amiajnl-2011-000615
Author(s): Berg, Jeremy M
DOI: 10.1136/amiajnl-2011-000800