Informatics research to enable clinically relevant, personalized genomic medicine.
Author(s): Ohno-Machado, Lucila
DOI: 10.1136/amiajnl-2012-000844
Author(s): Ohno-Machado, Lucila
DOI: 10.1136/amiajnl-2012-000844
Real-time locating systems (RTLS) have the potential to enhance healthcare systems through the live tracking of assets, patients and staff. This study evaluated a commercially available RTLS system deployed in a clinical setting, with three objectives: (1) assessment of the location accuracy of the technology in a clinical setting; (2) assessment of the value of asset tracking to staff; and (3) assessment of threshold monitoring applications developed for patient tracking [...]
Author(s): Okoniewska, Barbara, Graham, Alecia, Gavrilova, Marina, Wah, Dannel, Gilgen, Jonathan, Coke, Jason, Burden, Jack, Nayyar, Shikha, Kaunda, Joseph, Yergens, Dean, Baylis, Barry, Ghali, William A, ,
DOI: 10.1136/amiajnl-2011-000560
Morphologic variations of disease are often linked to underlying molecular events and patient outcome, suggesting that quantitative morphometric analysis may provide further insight into disease mechanisms. In this paper a methodology for the subclassification of disease is developed using image analysis techniques. Morphologic signatures that represent patient-specific tumor morphology are derived from the analysis of hundreds of millions of cells in digitized whole slide images. Clustering these signatures aggregates tumors [...]
Author(s): Cooper, Lee A D, Kong, Jun, Gutman, David A, Wang, Fusheng, Gao, Jingjing, Appin, Christina, Cholleti, Sharath, Pan, Tony, Sharma, Ashish, Scarpace, Lisa, Mikkelsen, Tom, Kurc, Tahsin, Moreno, Carlos S, Brat, Daniel J, Saltz, Joel H
DOI: 10.1136/amiajnl-2011-000700
Author(s): Berg, Jeremy M
DOI: 10.1136/amiajnl-2011-000800
The performance of a classification system depends on the context in which it will be used, including the prevalence of the classes and the relative costs of different types of errors. Metrics such as accuracy are limited to the context in which the experiment was originally carried out, and metrics such as sensitivity, specificity, and receiver operating characteristic area--while independent of prevalence--do not provide a clear picture of the performance [...]
Author(s): Hripcsak, George
DOI: 10.1136/amiajnl-2011-000633
Translational informatics (TI) is extremely important for the pharmaceutical industry, especially as the bar for regulatory approval of new medications is set higher and higher. This paper will explore three specific areas in the drug development lifecycle, from tools developed by precompetitive consortia to standardized clinical data collection to the effective delivery of medications using clinical decision support, in which TI has a major role to play. Advancing TI will [...]
Author(s): Cantor, Michael N
DOI: 10.1136/amiajnl-2011-000588
To examine the impact of a personal health record (PHR) in patients with hypertension measured by changes in biological outcomes, patient empowerment, patient perception of quality of care, and use of medical services.
Author(s): Wagner, Peggy J, Dias, James, Howard, Shalon, Kintziger, Kristina W, Hudson, Matthew F, Seol, Yoon-Ho, Sodomka, Pat
DOI: 10.1136/amiajnl-2011-000349
Accurate clinical problem lists are critical for patient care, clinical decision support, population reporting, quality improvement, and research. However, problem lists are often incomplete or out of date.
Author(s): Wright, Adam, Pang, Justine, Feblowitz, Joshua C, Maloney, Francine L, Wilcox, Allison R, McLoughlin, Karen Sax, Ramelson, Harley, Schneider, Louise, Bates, David W
DOI: 10.1136/amiajnl-2011-000521
A complex disease is generally caused by the mutation of multiple genes or by the dysfunction of multiple biological processes. Systematic identification of causal disease genes and module biomarkers can provide insights into the mechanisms underlying complex diseases, and help develop efficient therapies or effective drugs.
Author(s): Liu, Xiaoping, Liu, Zhi-Ping, Zhao, Xing-Ming, Chen, Luonan
DOI: 10.1136/amiajnl-2011-000658
Author(s): Ohno-Machado, Lucila
DOI: 10.1136/amiajnl-2011-000673