The journey to transparency, reproducibility, and replicability.
Author(s): Bakken, Suzanne
DOI: 10.1093/jamia/ocz007
Author(s): Bakken, Suzanne
DOI: 10.1093/jamia/ocz007
Many point-of-care laboratory tests are manually entered into the electronic health record by ambulatory clinic staff, but the rate of manual transcription error for this testing is poorly characterized. Using a dataset arising from a duplicated workflow that created a set of paired interfaced and manually entered point-of-care glucose measurements, we found that 260 of 6930 (3.7%) manual entries were discrepant from their interfaced result. Thirty-seven of the 260 (14.2%) [...]
Author(s): Mays, James A, Mathias, Patrick C
DOI: 10.1093/jamia/ocy170
Alcohol misuse is present in over a quarter of trauma patients. Information in the clinical notes of the electronic health record of trauma patients may be used for phenotyping tasks with natural language processing (NLP) and supervised machine learning. The objective of this study is to train and validate an NLP classifier for identifying patients with alcohol misuse.
Author(s): Afshar, Majid, Phillips, Andrew, Karnik, Niranjan, Mueller, Jeanne, To, Daniel, Gonzalez, Richard, Price, Ron, Cooper, Richard, Joyce, Cara, Dligach, Dmitriy
DOI: 10.1093/jamia/ocy166
There is global interest in implementing national information systems to support healthcare, and the National Health Service in England (NHS) has a troubled 25-year history in this sphere. Our objective was to chronicle structural reorganizations within the NHS from 1973 to 2017, alongside concurrent national information technology (IT) strategies, as the basis for developing a conceptual model to aid understanding of the organizational factors involved.
Author(s): Price, Colin, Green, William, Suhomlinova, Olga
DOI: 10.1093/jamia/ocy162
We describe a stratified sampling design that combines electronic health records (EHRs) and United States Census (USC) data to construct the sampling frame and an algorithm to enrich the sample with individuals belonging to rarer strata.
Author(s): Mercaldo, Nathaniel D, Brothers, Kyle B, Carrell, David S, Clayton, Ellen W, Connolly, John J, Holm, Ingrid A, Horowitz, Carol R, Jarvik, Gail P, Kitchner, Terrie E, Li, Rongling, McCarty, Catherine A, McCormick, Jennifer B, McManus, Valerie D, Myers, Melanie F, Pankratz, Joshua J, Shrubsole, Martha J, Smith, Maureen E, Stallings, Sarah C, Williams, Janet L, Schildcrout, Jonathan S
DOI: 10.1093/jamia/ocy164
The aim of this study was to generate synthetic electronic health records (EHRs). The generated EHR data will be more realistic than those generated using the existing medical Generative Adversarial Network (medGAN) method.
Author(s): Baowaly, Mrinal Kanti, Lin, Chia-Ching, Liu, Chao-Lin, Chen, Kuan-Ta
DOI: 10.1093/jamia/ocy142
Mappings between ontologies enable reuse and interoperability of biomedical knowledge. The Radiology Gamuts Ontology (RGO)-an ontology of 16 918 diseases, interventions, and imaging observations-provides a resource for differential diagnosis and automated textual report understanding in radiology. An automated process with subsequent manual review was used to identify exact and partial matches of RGO entities to the Disease Ontology (DO) and the Human Phenotype Ontology (HPO). Exact mappings identified equivalent concepts [...]
Author(s): Finke, Michael T, Filice, Ross W, Kahn, Charles E
DOI: 10.1093/jamia/ocy161
To better understand the real-world effects of pharmacogenomic (PGx) alerts, this study aimed to characterize alert design within the eMERGE Network, and to establish a method for sharing PGx alert response data for aggregate analysis. Seven eMERGE sites submitted design details and established an alert logging data dictionary. Six sites participated in a pilot study, sharing alert response data from their electronic health record systems. PGx alert design varied, with [...]
Author(s): Herr, Timothy M, Peterson, Josh F, Rasmussen, Luke V, Caraballo, Pedro J, Peissig, Peggy L, Starren, Justin B
DOI: 10.1093/jamia/ocy156
Most electronic health records display historical medication information only in a data table or clinician notes. We designed a medication timeline visualization intended to improve ease of use, speed, and accuracy in the ambulatory care of chronic disease.
Author(s): Belden, Jeffery L, Wegier, Pete, Patel, Jennifer, Hutson, Andrew, Plaisant, Catherine, Moore, Joi L, Lowrance, Nathan J, Boren, Suzanne A, Koopman, Richelle J
DOI: 10.1093/jamia/ocy143
The creation of people-driven data collaboratives, with governance structures that enable participants to have a meaningful voice in issues surrounding the use of their own data, is a novel strategy to harness our growing capacity to develop and maintain immense data assets from the real health experiences of individuals.
Author(s): Evans, Barbara J, Krumholz, Harlan M
DOI: 10.1093/jamia/ocy159