JAMIA at 30: looking back and forward.
Author(s): Stead, William W, Miller, Randolph A, Ohno-Machado, Lucila, Bakken, Suzanne
DOI: 10.1093/jamia/ocad215
Author(s): Stead, William W, Miller, Randolph A, Ohno-Machado, Lucila, Bakken, Suzanne
DOI: 10.1093/jamia/ocad215
Respiratory syncytial virus (RSV) is a significant cause of pediatric hospitalizations. This article aims to utilize multisource data and leverage the tensor methods to uncover distinct RSV geographic clusters and develop an accurate RSV prediction model for future seasons.
Author(s): Yang, Chaoqi, Gao, Junyi, Glass, Lucas, Cross, Adam, Sun, Jimeng
DOI: 10.1093/jamia/ocad212
To design an interface to support communication of machine learning (ML)-based prognosis for patients with advanced solid tumors, incorporating oncologists' needs and feedback throughout design.
Author(s): Staes, Catherine J, Beck, Anna C, Chalkidis, George, Scheese, Carolyn H, Taft, Teresa, Guo, Jia-Wen, Newman, Michael G, Kawamoto, Kensaku, Sloss, Elizabeth A, McPherson, Jordan P
DOI: 10.1093/jamia/ocad201
Surveillance algorithms that predict patient decompensation are increasingly integrated with clinical workflows to help identify patients at risk of in-hospital deterioration. This scoping review aimed to identify the design features of the information displays, the types of algorithm that drive the display, and the effect of these displays on process and patient outcomes.
Author(s): Wan, Yik-Ki Jacob, Wright, Melanie C, McFarland, Mary M, Dishman, Deniz, Nies, Mary A, Rush, Adriana, Madaras-Kelly, Karl, Jeppesen, Amanda, Del Fiol, Guilherme
DOI: 10.1093/jamia/ocad203
While there are currently approaches to handle unstructured clinical data, such as manual abstraction and structured proxy variables, these methods may be time-consuming, not scalable, and imprecise. This article aims to determine whether selective prediction, which gives a model the option to abstain from generating a prediction, can improve the accuracy and efficiency of unstructured clinical data abstraction.
Author(s): Swaminathan, Akshay, Lopez, Ivan, Wang, William, Srivastava, Ujwal, Tran, Edward, Bhargava-Shah, Aarohi, Wu, Janet Y, Ren, Alexander L, Caoili, Kaitlin, Bui, Brandon, Alkhani, Layth, Lee, Susan, Mohit, Nathan, Seo, Noel, Macedo, Nicholas, Cheng, Winson, Liu, Charles, Thomas, Reena, Chen, Jonathan H, Gevaert, Olivier
DOI: 10.1093/jamia/ocad182
Bacterial infections (BIs) are common, costly, and potentially life-threatening in critically ill patients. Patients with suspected BIs may require empiric multidrug antibiotic regimens and therefore potentially be exposed to prolonged and unnecessary antibiotics. We previously developed a BI risk model to augment practices and help shorten the duration of unnecessary antibiotics to improve patient outcomes. Here, we have performed a transportability assessment of this BI risk model in 2 tertiary [...]
Author(s): Eickelberg, Garrett, Sanchez-Pinto, Lazaro Nelson, Kline, Adrienne Sarah, Luo, Yuan
DOI: 10.1093/jamia/ocad174
Applications of machine learning in healthcare are of high interest and have the potential to improve patient care. Yet, the real-world accuracy of these models in clinical practice and on different patient subpopulations remains unclear. To address these important questions, we hosted a community challenge to evaluate methods that predict healthcare outcomes. We focused on the prediction of all-cause mortality as the community challenge question.
Author(s): Bergquist, Timothy, Schaffter, Thomas, Yan, Yao, Yu, Thomas, Prosser, Justin, Gao, Jifan, Chen, Guanhua, Charzewski, Łukasz, Nawalany, Zofia, Brugere, Ivan, Retkute, Renata, Prusokas, Alidivinas, Prusokas, Augustinas, Choi, Yonghwa, Lee, Sanghoon, Choe, Junseok, Lee, Inggeol, Kim, Sunkyu, Kang, Jaewoo, Mooney, Sean D, Guinney, Justin, ,
DOI: 10.1093/jamia/ocad159
The pitfalls of label leakage, contamination of model input features with outcome information, are well established. Unfortunately, avoiding label leakage in clinical prediction models requires more nuance than the common advice of applying "no time machine rule."
Author(s): Davis, Sharon E, Matheny, Michael E, Balu, Suresh, Sendak, Mark P
DOI: 10.1093/jamia/ocad178
Identifying sets of rare diseases with shared aspects of etiology and pathophysiology may enable drug repurposing. Toward that aim, we utilized an integrative knowledge graph to construct clusters of rare diseases.
Author(s): Sanjak, Jaleal, Binder, Jessica, Yadaw, Arjun Singh, Zhu, Qian, Mathé, Ewy A
DOI: 10.1093/jamia/ocad186
Electronic health records (EHRs) user interfaces (UI) designed for data entry can potentially impact the quality of patient information captured in the EHRs. This review identified and synthesized the literature evidence about the relationship of UI features in EHRs on data quality (DQ).
Author(s): Madandola, Olatunde O, Bjarnadottir, Ragnhildur I, Yao, Yingwei, Ansell, Margaret, Dos Santos, Fabiana, Cho, Hwayoung, Dunn Lopez, Karen, Macieira, Tamara G R, Keenan, Gail M
DOI: 10.1093/jamia/ocad188