Reply to Barthell et al.
Author(s): Turer, Robert W, Jones, Ian, Rosenbloom, S Trent, Slovis, Corey, Ward, Michael J
DOI: 10.1093/jamia/ocaa111
Author(s): Turer, Robert W, Jones, Ian, Rosenbloom, S Trent, Slovis, Corey, Ward, Michael J
DOI: 10.1093/jamia/ocaa111
As clinical trials evolve in complexity, clinical trial data models that can capture relevant trial data in meaningful, structured annotations and computable forms are needed to support accrual.
Author(s): Jain, Neha, Mittendorf, Kathleen F, Holt, Marilyn, Lenoue-Newton, Michele, Maurer, Ian, Miller, Clinton, Stachowiak, Matthew, Botyrius, Michelle, Cole, James, Micheel, Christine, Levy, Mia
DOI: 10.1093/jamia/ocaa066
Unsupervised machine learning approaches hold promise for large-scale clinical data. However, the heterogeneity of clinical data raises new methodological challenges in feature selection, choosing a distance metric that captures biological meaning, and visualization. We hypothesized that clustering could discover prognostic groups from patients with chronic lymphocytic leukemia, a disease that provides biological validation through well-understood outcomes.
Author(s): Coombes, Caitlin E, Abrams, Zachary B, Li, Suli, Abruzzo, Lynne V, Coombes, Kevin R
DOI: 10.1093/jamia/ocaa060
The objective of this project was to enable poison control center (PCC) participation in standards-based health information exchange (HIE). Previously, PCC participation was not possible due to software noncompliance with HIE standards, lack of informatics infrastructure, and the need to integrate HIE processes into workflow.
Author(s): Cummins, Mollie R, Del Fiol, Guilherme, Crouch, Barbara I, Ranade-Kharkar, Pallavi, Khalifa, Aly, Iskander, Andrew, Mann, Darren, Hoffman, Matt, Thornton, Sid, Allen, Todd L, Bennett, Heather
DOI: 10.1093/jamia/ocaa055
Ubiquitous technologies can be leveraged to construct ecologically relevant metrics that complement traditional psychological assessments. This study aims to determine the feasibility of smartphone-derived real-world keyboard metadata to serve as digital biomarkers of mood.
Author(s): Vesel, Claudia, Rashidisabet, Homa, Zulueta, John, Stange, Jonathan P, Duffecy, Jennifer, Hussain, Faraz, Piscitello, Andrea, Bark, John, Langenecker, Scott A, Young, Shannon, Mounts, Erin, Omberg, Larsson, Nelson, Peter C, Moore, Raeanne C, Koziol, Dave, Bourne, Keith, Bennett, Casey C, Ajilore, Olusola, Demos, Alexander P, Leow, Alex
DOI: 10.1093/jamia/ocaa057
Author(s): Barthell, Edward, Handler, Jonathan
DOI: 10.1093/jamia/ocaa110
To conduct a systematic scoping review of explainable artificial intelligence (XAI) models that use real-world electronic health record data, categorize these techniques according to different biomedical applications, identify gaps of current studies, and suggest future research directions.
Author(s): Payrovnaziri, Seyedeh Neelufar, Chen, Zhaoyi, Rengifo-Moreno, Pablo, Miller, Tim, Bian, Jiang, Chen, Jonathan H, Liu, Xiuwen, He, Zhe
DOI: 10.1093/jamia/ocaa053
TREC-COVID is an information retrieval (IR) shared task initiated to support clinicians and clinical research during the COVID-19 pandemic. IR for pandemics breaks many normal assumptions, which can be seen by examining 9 important basic IR research questions related to pandemic situations. TREC-COVID differs from traditional IR shared task evaluations with special considerations for the expected users, IR modality considerations, topic development, participant requirements, assessment process, relevance criteria, evaluation metrics [...]
Author(s): Roberts, Kirk, Alam, Tasmeer, Bedrick, Steven, Demner-Fushman, Dina, Lo, Kyle, Soboroff, Ian, Voorhees, Ellen, Wang, Lucy Lu, Hersh, William R
DOI: 10.1093/jamia/ocaa091
Author(s): Ramsetty, Anita, Adams, Cristin
DOI: 10.1093/jamia/ocaa078
Data and information technology are key to every aspect of our response to the current coronavirus disease 2019 (COVID-19) pandemic-including the diagnosis of patients and delivery of care, the development of predictive models of disease spread, and the management of personnel and equipment. The increasing engagement of informaticians at the forefront of these efforts has been a fundamental shift, from an academic to an operational role. However, the past history [...]
Author(s): Kannampallil, Thomas G, Foraker, Randi E, Lai, Albert M, Woeltje, Keith F, Payne, Philip R O
DOI: 10.1093/jamia/ocaa073