Making it personal: translational bioinformatics.
Author(s): Butte, Atul J, Ohno-Machado, Lucila
DOI: 10.1136/amiajnl-2013-002028
Author(s): Butte, Atul J, Ohno-Machado, Lucila
DOI: 10.1136/amiajnl-2013-002028
Author(s): Hsu, William, Markey, Mia K, Wang, May D
DOI: 10.1136/amiajnl-2013-002315
With the objective of bringing clinical decision support systems to reality, this article reviews histopathological whole-slide imaging informatics methods, associated challenges, and future research opportunities.
Author(s): Kothari, Sonal, Phan, John H, Stokes, Todd H, Wang, May D
DOI: 10.1136/amiajnl-2012-001540
The integration and visualization of multimodal datasets is a common challenge in biomedical informatics. Several recent studies of The Cancer Genome Atlas (TCGA) data have illustrated important relationships between morphology observed in whole-slide images, outcome, and genetic events. The pairing of genomics and rich clinical descriptions with whole-slide imaging provided by TCGA presents a unique opportunity to perform these correlative studies. However, better tools are needed to integrate the vast [...]
Author(s): Gutman, David A, Cobb, Jake, Somanna, Dhananjaya, Park, Yuna, Wang, Fusheng, Kurc, Tahsin, Saltz, Joel H, Brat, Daniel J, Cooper, Lee A D
DOI: 10.1136/amiajnl-2012-001469
Advances in MRI hardware and sequences are continually increasing the amount and complexity of data such as those generated in high-resolution three-dimensional (3D) scanning of the spine. Efficient informatics tools offer considerable opportunities for research and clinically based analyses of magnetic resonance studies. In this work, we present and validate a suite of informatics tools for automated detection of degenerative changes in lumbar intervertebral discs (IVD) from both 3D isotropic [...]
Author(s): Neubert, A, Fripp, J, Engstrom, C, Walker, D, Weber, M-A, Schwarz, R, Crozier, S
DOI: 10.1136/amiajnl-2012-001547
To investigate machine learning for linking image content, human perception, cognition, and error in the diagnostic interpretation of mammograms.
Author(s): Tourassi, Georgia, Voisin, Sophie, Paquit, Vincent, Krupinski, Elizabeth
DOI: 10.1136/amiajnl-2012-001503
As large-scale medical imaging studies are becoming more common, there is an increasing reliance on automated software to extract quantitative information from these images. As the size of the cohorts keeps increasing with large studies, there is a also a need for tools that allow results from automated image processing and analysis to be presented in a way that enables fast and efficient quality checking, tagging and reporting on cases [...]
Author(s): Bourgeat, P, Dore, V, Villemagne, V L, Rowe, C C, Salvado, O, Fripp, J
DOI: 10.1136/amiajnl-2012-001545
Author(s): Fickenscher, Kevin M
DOI: 10.1136/amiajnl-2013-001976
To compare the manifestations, mechanisms, and rates of system-related errors associated with two electronic prescribing systems (e-PS). To determine if the rate of system-related prescribing errors is greater than the rate of errors prevented.
Author(s): Westbrook, Johanna I, Baysari, Melissa T, Li, Ling, Burke, Rosemary, Richardson, Katrina L, Day, Richard O
DOI: 10.1136/amiajnl-2013-001745
To provide a natural language processing method for the automatic recognition of events, temporal expressions, and temporal relations in clinical records.
Author(s): Roberts, Kirk, Rink, Bryan, Harabagiu, Sanda M
DOI: 10.1136/amiajnl-2013-001619