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Showing 4891 - 4900 out of 7542
JAMIA Article

Review and evaluation of electronic health records-driven phenotype algorithm authoring tools for clinical and translational research.

November 1, 2015

To review and evaluate available software tools for electronic health record-driven phenotype authoring in order to identify gaps and needs for future development.

Author(s): Xu, Jie, Rasmussen, Luke V, Shaw, Pamela L, Jiang, Guoqian, Kiefer, Richard C, Mo, Huan, Pacheco, Jennifer A, Speltz, Peter, Zhu, Qian, Denny, Joshua C, Pathak, Jyotishman, Thompson, William K, Montague, Enid

DOI: 10.1093/jamia/ocv070

JAMIA Article

Learning from the crowd while mapping to LOINC.

November 1, 2015

To describe the perspectives of Regenstrief LOINC Mapping Assistant (RELMA) users before and after the deployment of Community Mapping features, characterize the usage of these new features, and analyze the quality of mappings submitted to the community mapping repository.

Author(s): Vreeman, Daniel J, Hook, John, Dixon, Brian E

DOI: 10.1093/jamia/ocv098

JAMIA Article

KnowEnG: a knowledge engine for genomics.

November 1, 2015

We describe here the vision, motivations, and research plans of the National Institutes of Health Center for Excellence in Big Data Computing at the University of Illinois, Urbana-Champaign. The Center is organized around the construction of "Knowledge Engine for Genomics" (KnowEnG), an E-science framework for genomics where biomedical scientists will have access to powerful methods of data mining, network mining, and machine learning to extract knowledge out of genomics data [...]

Author(s): Sinha, Saurabh, Song, Jun, Weinshilboum, Richard, Jongeneel, Victor, Han, Jiawei

DOI: 10.1093/jamia/ocv090

JAMIA Article

SMART on FHIR Genomics: facilitating standardized clinico-genomic apps.

November 1, 2015

Supporting clinical decision support for personalized medicine will require linking genome and phenome variants to a patient's electronic health record (EHR), at times on a vast scale. Clinico-genomic data standards will be needed to unify how genomic variant data are accessed from different sequencing systems.

Author(s): Alterovitz, Gil, Warner, Jeremy, Zhang, Peijin, Chen, Yishen, Ullman-Cullere, Mollie, Kreda, David, Kohane, Isaac S

DOI: 10.1093/jamia/ocv045

JAMIA Article

The NIH BD2K center for big data in translational genomics.

November 1, 2015

The world's genomics data will never be stored in a single repository - rather, it will be distributed among many sites in many countries. No one site will have enough data to explain genotype to phenotype relationships in rare diseases; therefore, sites must share data. To accomplish this, the genetics community must forge common standards and protocols to make sharing and computing data among many sites a seamless activity. Through [...]

Author(s): Paten, Benedict, Diekhans, Mark, Druker, Brian J, Friend, Stephen, Guinney, Justin, Gassner, Nadine, Guttman, Mitchell, Kent, W James, Mantey, Patrick, Margolin, Adam A, Massie, Matt, Novak, Adam M, Nothaft, Frank, Pachter, Lior, Patterson, David, Smuga-Otto, Maciej, Stuart, Joshua M, Van't Veer, Laura, Wold, Barbara, Haussler, David

DOI: 10.1093/jamia/ocv047

JAMIA Article

CSER and eMERGE: current and potential state of the display of genetic information in the electronic health record.

November 1, 2015

Clinicians' ability to use and interpret genetic information depends upon how those data are displayed in electronic health records (EHRs). There is a critical need to develop systems to effectively display genetic information in EHRs and augment clinical decision support (CDS).

Author(s): Shirts, Brian H, Salama, Joseph S, Aronson, Samuel J, Chung, Wendy K, Gray, Stacy W, Hindorff, Lucia A, Jarvik, Gail P, Plon, Sharon E, Stoffel, Elena M, Tarczy-Hornoch, Peter Z, Van Allen, Eliezer M, Weck, Karen E, Chute, Christopher G, Freimuth, Robert R, Grundmeier, Robert W, Hartzler, Andrea L, Li, Rongling, Peissig, Peggy L, Peterson, Josh F, Rasmussen, Luke V, Starren, Justin B, Williams, Marc S, Overby, Casey L

DOI: 10.1093/jamia/ocv065

JAMIA Article

Recommendations to improve the usability of drug-drug interaction clinical decision support alerts.

November 1, 2015

To establish preferred strategies for presenting drug-drug interaction (DDI) clinical decision support alerts.

Author(s): Payne, Thomas H, Hines, Lisa E, Chan, Raymond C, Hartman, Seth, Kapusnik-Uner, Joan, Russ, Alissa L, Chaffee, Bruce W, Hartman, Christian, Tamis, Victoria, Galbreth, Brian, Glassman, Peter A, Phansalkar, Shobha, van der Sijs, Heleen, Gephart, Sheila M, Mann, Gordon, Strasberg, Howard R, Grizzle, Amy J, Brown, Mary, Kuperman, Gilad J, Steiner, Chris, Sullins, Amanda, Ryan, Hugh, Wittie, Michael A, Malone, Daniel C

DOI: 10.1093/jamia/ocv011

JAMIA Article

Virtualization of open-source secure web services to support data exchange in a pediatric critical care research network.

November 1, 2015

To examine the feasibility of deploying a virtual web service for sharing data within a research network, and to evaluate the impact on data consistency and quality.

Author(s): Frey, Lewis J, Sward, Katherine A, Newth, Christopher J L, Khemani, Robinder G, Cryer, Martin E, Thelen, Julie L, Enriquez, Rene, Shaoyu, Su, Pollack, Murray M, Harrison, Rick E, Meert, Kathleen L, Berg, Robert A, Wessel, David L, Shanley, Thomas P, Dalton, Heidi, Carcillo, Joseph, Jenkins, Tammara L, Dean, J Michael

DOI: 10.1093/jamia/ocv009

JAMIA Article

Design and implementation of a privacy preserving electronic health record linkage tool in Chicago.

September 1, 2015

To design and implement a tool that creates a secure, privacy preserving linkage of electronic health record (EHR) data across multiple sites in a large metropolitan area in the United States (Chicago, IL), for use in clinical research.

Author(s): Kho, Abel N, Cashy, John P, Jackson, Kathryn L, Pah, Adam R, Goel, Satyender, Boehnke, Jörn, Humphries, John Eric, Kominers, Scott Duke, Hota, Bala N, Sims, Shannon A, Malin, Bradley A, French, Dustin D, Walunas, Theresa L, Meltzer, David O, Kaleba, Erin O, Jones, Roderick C, Galanter, William L

DOI: 10.1093/jamia/ocv038

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