Informatics and data science approaches address significant public health problems.
Author(s): Bakken, Suzanne
DOI: 10.1093/jamia/ocad076
Author(s): Bakken, Suzanne
DOI: 10.1093/jamia/ocad076
We propose a system, quEHRy, to retrieve precise, interpretable answers to natural language questions from structured data in electronic health records (EHRs).
Author(s): Soni, Sarvesh, Datta, Surabhi, Roberts, Kirk
DOI: 10.1093/jamia/ocad050
Clinical encounter data are heterogeneous and vary greatly from institution to institution. These problems of variance affect interpretability and usability of clinical encounter data for analysis. These problems are magnified when multisite electronic health record (EHR) data are networked together. This article presents a novel, generalizable method for resolving encounter heterogeneity for analysis by combining related atomic encounters into composite "macrovisits."
Author(s): Leese, Peter, Anand, Adit, Girvin, Andrew, Manna, Amin, Patel, Saaya, Yoo, Yun Jae, Wong, Rachel, Haendel, Melissa, Chute, Christopher G, Bennett, Tellen, Hajagos, Janos, Pfaff, Emily, Moffitt, Richard
DOI: 10.1093/jamia/ocad057
The objective was to develop a dataset definition, information model, and FHIR® specification for key data elements contained in a German molecular genomics (MolGen) report to facilitate genomic and phenotype integration in electronic health records.
Author(s): Stellmach, Caroline, Sass, Julian, Auber, Bernd, Boeker, Martin, Wienker, Thomas, Heidel, Andrew J, Benary, Manuela, Schumacher, Simon, Ossowski, Stephan, Klauschen, Frederick, Möller, Yvonne, Schmutzler, Rita, Ustjanzew, Arsenij, Werner, Patrick, Tomczak, Aurelie, Hölter, Thimo, Thun, Sylvia
DOI: 10.1093/jamia/ocad061
To study the coverage and challenges in mapping 3 national and international procedure coding systems to the International Classification of Health Interventions (ICHI).
Author(s): Fung, Kin Wah, Xu, Julia, Ameye, Filip, Burelle, Lisa, MacNeil, Janice
DOI: 10.1093/jamia/ocad064
Severe infection can lead to organ dysfunction and sepsis. Identifying subphenotypes of infected patients is essential for personalized management. It is unknown how different time series clustering algorithms compare in identifying these subphenotypes.
Author(s): Bhavani, Sivasubramanium V, Xiong, Li, Pius, Abish, Semler, Matthew, Qian, Edward T, Verhoef, Philip A, Robichaux, Chad, Coopersmith, Craig M, Churpek, Matthew M
DOI: 10.1093/jamia/ocad063
Compared to natural language processing research investigating suicide risk prediction with social media (SM) data, research utilizing data from clinical settings are scarce. However, the utility of models trained on SM data in text from clinical settings remains unclear. In addition, commonly used performance metrics do not directly translate to operational value in a real-world deployment. The objectives of this study were to evaluate the utility of SM-derived training data [...]
Author(s): Burkhardt, Hannah A, Ding, Xiruo, Kerbrat, Amanda, Comtois, Katherine Anne, Cohen, Trevor
DOI: 10.1093/jamia/ocad062
Deep learning (DL) has been applied in proofs of concept across biomedical imaging, including across modalities and medical specialties. Labeled data are critical to training and testing DL models, but human expert labelers are limited. In addition, DL traditionally requires copious training data, which is computationally expensive to process and iterate over. Consequently, it is useful to prioritize using those images that are most likely to improve a model's performance [...]
Author(s): Chinn, Erin, Arora, Rohit, Arnaout, Ramy, Arnaout, Rima
DOI: 10.1093/jamia/ocad055
The study tests a community- and data-driven approach to homelessness prevention. Federal policies call for efficient and equitable local responses to homelessness. However, the overwhelming demand for limited homeless assistance is challenging without empirically supported decision-making tools and raises questions of whom to serve with scarce resources.
Author(s): Kube, Amanda R, Das, Sanmay, Fowler, Patrick J
DOI: 10.1093/jamia/ocad052
The 21st Century Cures Act Final Rule's information blocking provisions, which prohibited practices likely to interfere with, prevent, or materially discourage access, exchange, or use of electronic health information (EHI), began to apply to a limited set of data elements in April 2021 and expanded to all EHI in October 2022. We sought to describe hospital leaders' perceptions of the prevalence of practices that may constitute information blocking, by actor [...]
Author(s): Everson, Jordan, Healy, Daniel, Patel, Vaishali
DOI: 10.1093/jamia/ocad060