Advancing the science of visualization of health data for lay audiences.
Author(s): Arcia, Adriana, Benda, Natalie C, Wu, Danny T Y
DOI: 10.1093/jamia/ocad255
Author(s): Arcia, Adriana, Benda, Natalie C, Wu, Danny T Y
DOI: 10.1093/jamia/ocad255
Pediatric patients have different diseases and outcomes than adults; however, existing phecodes do not capture the distinctive pediatric spectrum of disease. We aim to develop specialized pediatric phecodes (Peds-Phecodes) to enable efficient, large-scale phenotypic analyses of pediatric patients.
Author(s): Grabowska, Monika E, Van Driest, Sara L, Robinson, Jamie R, Patrick, Anna E, Guardo, Chris, Gangireddy, Srushti, Ong, Henry H, Feng, QiPing, Carroll, Robert, Kannankeril, Prince J, Wei, Wei-Qi
DOI: 10.1093/jamia/ocad233
We aim to build a generalizable information extraction system leveraging large language models to extract granular eligibility criteria information for diverse diseases from free text clinical trial protocol documents. We investigate the model's capability to extract criteria entities along with contextual attributes including values, temporality, and modifiers and present the strengths and limitations of this system.
Author(s): Datta, Surabhi, Lee, Kyeryoung, Paek, Hunki, Manion, Frank J, Ofoegbu, Nneka, Du, Jingcheng, Li, Ying, Huang, Liang-Chin, Wang, Jingqi, Lin, Bin, Xu, Hua, Wang, Xiaoyan
DOI: 10.1093/jamia/ocad218
To determine if different formats for conveying machine learning (ML)-derived postpartum depression risks impact patient classification of recommended actions (primary outcome) and intention to seek care, perceived risk, trust, and preferences (secondary outcomes).
Author(s): Desai, Pooja M, Harkins, Sarah, Rahman, Saanjaana, Kumar, Shiveen, Hermann, Alison, Joly, Rochelle, Zhang, Yiye, Pathak, Jyotishman, Kim, Jessica, D'Angelo, Deborah, Benda, Natalie C, Reading Turchioe, Meghan
DOI: 10.1093/jamia/ocad198
In the United States, over 12 000 home healthcare agencies annually serve 6+ million patients, mostly aged 65+ years with chronic conditions. One in three of these patients end up visiting emergency department (ED) or being hospitalized. Existing risk identification models based on electronic health record (EHR) data have suboptimal performance in detecting these high-risk patients.
Author(s): Zolnoori, Maryam, Sridharan, Sridevi, Zolnour, Ali, Vergez, Sasha, McDonald, Margaret V, Kostic, Zoran, Bowles, Kathryn H, Topaz, Maxim
DOI: 10.1093/jamia/ocad195
Changes in cardiovascular health (CVH) during the life course are associated with future cardiovascular disease (CVD). Longitudinal clustering analysis using subgraph augmented non-negative matrix factorization (SANMF) could create phenotypic risk profiles of clustered CVH metrics.
Author(s): Graffy, Peter, Zimmerman, Lindsay, Luo, Yuan, Yu, Jingzhi, Choi, Yuni, Zmora, Rachel, Lloyd-Jones, Donald, Allen, Norrina Bai
DOI: 10.1093/jamia/ocad240
Due to heterogeneity and limited medical data in primary healthcare services (PHS), assessing the psychological risk of type 2 diabetes mellitus (T2DM) patients in PHS is difficult. Using unsupervised contrastive pre-training, we proposed a deep learning framework named depression and anxiety prediction (DAP) to predict depression and anxiety in T2DM patients.
Author(s): Feng, Wei, Wu, Honghan, Ma, Hui, Tao, Zhenhuan, Xu, Mengdie, Zhang, Xin, Lu, Shan, Wan, Cheng, Liu, Yun
DOI: 10.1093/jamia/ocad228
The early stages of chronic disease typically progress slowly, so symptoms are usually only noticed until the disease is advanced. Slow progression and heterogeneous manifestations make it challenging to model the transition from normal to disease status. As patient conditions are only observed at discrete timestamps with varying intervals, an incomplete understanding of disease progression and heterogeneity affects clinical practice and drug development.
Author(s): Wang, Yanfei, Zhao, Weiling, Ross, Angela, You, Lei, Wang, Hongyu, Zhou, Xiaobo
DOI: 10.1093/jamia/ocad230
Given the importance AI in genomics and its potential impact on human health, the American Medical Informatics Association-Genomics and Translational Biomedical Informatics (GenTBI) Workgroup developed this assessment of factors that can further enable the clinical application of AI in this space.
Author(s): Walton, Nephi A, Nagarajan, Radha, Wang, Chen, Sincan, Murat, Freimuth, Robert R, Everman, David B, Walton, Derek C, McGrath, Scott P, Lemas, Dominick J, Benos, Panayiotis V, Alekseyenko, Alexander V, Song, Qianqian, Gamsiz Uzun, Ece, Taylor, Casey Overby, Uzun, Alper, Person, Thomas Nate, Rappoport, Nadav, Zhao, Zhongming, Williams, Marc S
DOI: 10.1093/jamia/ocad211
To identify factors influencing implementation of machine learning algorithms (MLAs) that predict clinical deterioration in hospitalized adult patients and relate these to a validated implementation framework.
Author(s): van der Vegt, Anton H, Campbell, Victoria, Mitchell, Imogen, Malycha, James, Simpson, Joanna, Flenady, Tracy, Flabouris, Arthas, Lane, Paul J, Mehta, Naitik, Kalke, Vikrant R, Decoyna, Jovie A, Es'haghi, Nicholas, Liu, Chun-Huei, Scott, Ian A
DOI: 10.1093/jamia/ocad220