Moving forward on the science of informatics and predictive analytics.
Author(s): Bakken, Suzanne
DOI: 10.1093/jamia/ocae077
Author(s): Bakken, Suzanne
DOI: 10.1093/jamia/ocae077
Patient care using genetics presents complex challenges. Clinical decision support (CDS) tools are a potential solution because they provide patient-specific risk assessments and/or recommendations at the point of care. This systematic review evaluated the literature on CDS systems which have been implemented to support genetically guided precision medicine (GPM).
Author(s): Johnson, Darren, Del Fiol, Guilherme, Kawamoto, Kensaku, Romagnoli, Katrina M, Sanders, Nathan, Isaacson, Grace, Jenkins, Elden, Williams, Marc S
DOI: 10.1093/jamia/ocae033
Development of clinical phenotypes from electronic health records (EHRs) can be resource intensive. Several phenotype libraries have been created to facilitate reuse of definitions. However, these platforms vary in target audience and utility. We describe the development of the Centralized Interactive Phenomics Resource (CIPHER) knowledgebase, a comprehensive public-facing phenotype library, which aims to facilitate clinical and health services research.
Author(s): Honerlaw, Jacqueline, Ho, Yuk-Lam, Fontin, Francesca, Murray, Michael, Galloway, Ashley, Heise, David, Connatser, Keith, Davies, Laura, Gosian, Jeffrey, Maripuri, Monika, Russo, John, Sangar, Rahul, Tanukonda, Vidisha, Zielinski, Edward, Dubreuil, Maureen, Zimolzak, Andrew J, Panickan, Vidul A, Cheng, Su-Chun, Whitbourne, Stacey B, Gagnon, David R, Cai, Tianxi, Liao, Katherine P, Ramoni, Rachel B, Gaziano, J Michael, Muralidhar, Sumitra, Cho, Kelly
DOI: 10.1093/jamia/ocae042
To introduce 2 R-packages that facilitate conducting health economics research on OMOP-based data networks, aiming to standardize and improve the reproducibility, transparency, and transferability of health economic models.
Author(s): Haug, Markus, Oja, Marek, Pajusalu, Maarja, Mooses, Kerli, Reisberg, Sulev, Vilo, Jaak, Giménez, Antonio Fernández, Falconer, Thomas, Danilović, Ana, Maljkovic, Filip, Dawoud, Dalia, Kolde, Raivo
DOI: 10.1093/jamia/ocae044
Extracting PICO (Populations, Interventions, Comparison, and Outcomes) entities is fundamental to evidence retrieval. We present a novel method, PICOX, to extract overlapping PICO entities.
Author(s): Zhang, Gongbo, Zhou, Yiliang, Hu, Yan, Xu, Hua, Weng, Chunhua, Peng, Yifan
DOI: 10.1093/jamia/ocae065
Clinical trial data sharing is crucial for promoting transparency and collaborative efforts in medical research. Differential privacy (DP) is a formal statistical technique for anonymizing shared data that balances privacy of individual records and accuracy of replicated results through a "privacy budget" parameter, ε. DP is considered the state of the art in privacy-protected data publication and is underutilized in clinical trial data sharing. This study is focused on identifying [...]
Author(s): Chen, Henian, Pang, Jinyong, Zhao, Yayi, Giddens, Spencer, Ficek, Joseph, Valente, Matthew J, Cao, Biwei, Daley, Ellen
DOI: 10.1093/jamia/ocae038
To characterize the complex interplay between multiple clinical conditions in a time-to-event analysis framework using data from multiple hospitals, we developed two novel one-shot distributed algorithms for competing risk models (ODACoR). By applying our algorithms to the EHR data from eight national children's hospitals, we quantified the impacts of a wide range of risk factors on the risk of post-acute sequelae of SARS-COV-2 (PASC) among children and adolescents.
Author(s): Zhang, Dazheng, Tong, Jiayi, Jing, Naimin, Yang, Yuchen, Luo, Chongliang, Lu, Yiwen, Christakis, Dimitri A, Güthe, Diana, Hornig, Mady, Kelleher, Kelly J, Morse, Keith E, Rogerson, Colin M, Divers, Jasmin, Carroll, Raymond J, Forrest, Christopher B, Chen, Yong
DOI: 10.1093/jamia/ocae027
The timely initiation of renal replacement therapy (RRT) for acute kidney injury (AKI) requires sequential decision-making tailored to individuals' evolving characteristics. To learn and validate optimal strategies for RRT initiation, we used reinforcement learning on clinical data from routine care and randomized controlled trials.
Author(s): Grolleau, François, Petit, François, Gaudry, Stéphane, Diard, Élise, Quenot, Jean-Pierre, Dreyfuss, Didier, Tran, Viet-Thi, Porcher, Raphaël
DOI: 10.1093/jamia/ocae004
This article presents the National Healthcare Safety Network (NHSN)'s approach to automation for public health surveillance using digital quality measures (dQMs) via an open-source tool (NHSNLink) and piloting of this approach using real-world data in a newly established collaborative program (NHSNCoLab). The approach leverages Health Level Seven Fast Healthcare Interoperability Resources (FHIR) application programming interfaces to improve data collection and reporting for public health and patient safety beginning with common [...]
Author(s): Shehab, Nadine, Alschuler, Liora, McILvenna, Sean, Gonzaga, Zabrina, Laing, Andrew, deRoode, David, Dantes, Raymund B, Betz, Kristina, Zheng, Shuai, Abner, Sheila, Stutler, Elizabeth, Geimer, Rick, Benin, Andrea L
DOI: 10.1093/jamia/ocae064
Advances in informatics research come from academic, nonprofit, and for-profit industry organizations, and from academic-industry partnerships. While scientific studies of commercial products may offer critical lessons for the field, manuscripts authored by industry scientists are sometimes categorically rejected. We review historical context, community perceptions, and guidelines on informatics authorship.
Author(s): Strasberg, Howard R, Jackson, Gretchen Purcell, Bakken, Suzanne R, Boxwala, Aziz, Richardson, Joshua E, Morrow, Jon D
DOI: 10.1093/jamia/ocae063