Community abstracts: coming soon!
Author(s): Sarkar, Indra Neil
DOI: 10.1093/jamiaopen/ooz070
Author(s): Sarkar, Indra Neil
DOI: 10.1093/jamiaopen/ooz070
Clinical prediction models require updating as performance deteriorates over time. We developed a testing procedure to select updating methods that minimizes overfitting, incorporates uncertainty associated with updating sample sizes, and is applicable to both parametric and nonparametric models.
Author(s): Davis, Sharon E, Greevy, Robert A, Fonnesbeck, Christopher, Lasko, Thomas A, Walsh, Colin G, Matheny, Michael E
DOI: 10.1093/jamia/ocz127
Drug prescription errors are made, worldwide, on a daily basis, resulting in a high burden of morbidity and mortality. Existing rule-based systems for prevention of such errors are unsuccessful and associated with substantial burden of false alerts.
Author(s): Segal, G, Segev, A, Brom, A, Lifshitz, Y, Wasserstrum, Y, Zimlichman, E
DOI: 10.1093/jamia/ocz135
Clinical corpora can be deidentified using a combination of machine-learned automated taggers and hiding in plain sight (HIPS) resynthesis. The latter replaces detected personally identifiable information (PII) with random surrogates, allowing leaked PII to blend in or "hide in plain sight." We evaluated the extent to which a malicious attacker could expose leaked PII in such a corpus.
Author(s): Carrell, David S, Cronkite, David J, Li, Muqun Rachel, Nyemba, Steve, Malin, Bradley A, Aberdeen, John S, Hirschman, Lynette
DOI: 10.1093/jamia/ocz114
Driven by beneficial patient-centered outcomes associated with patient portal use and the Affordable Care Act, portal implementation has expanded into safety nets-health systems that offer access to care to a large share of uninsured, Medicaid, and other vulnerable populations. However, little attention has been paid to the factors that affect portal accessibility by the vulnerable patients served by these health systems-including those who are limited English proficient (LEP).
Author(s): Casillas, Alejandra, Perez-Aguilar, Giselle, Abhat, Anshu, Gutierrez, Griselda, Olmos-Ochoa, Tanya T, Mendez, Carmen, Mahajan, Anish, Brown, Arleen, Moreno, Gerardo
DOI: 10.1093/jamia/ocz115
There is increasing awareness that the methodology and findings of research should be transparent. This includes studies using artificial intelligence to develop predictive algorithms that make individualized diagnostic or prognostic risk predictions. We argue that it is paramount to make the algorithm behind any prediction publicly available. This allows independent external validation, assessment of performance heterogeneity across settings and over time, and algorithm refinement or updating. Online calculators and apps [...]
Author(s): Van Calster, Ben, Wynants, Laure, Timmerman, Dirk, Steyerberg, Ewout W, Collins, Gary S
DOI: 10.1093/jamia/ocz130
We developed and piloted a process for sharing guideline-based clinical decision support (CDS) across institutions, using health screening of newly arrived refugees as a case example.
Author(s): Orenstein, Evan W, Yun, Katherine, Warden, Clara, Westerhaus, Michael J, Mirth, Morgan G, Karavite, Dean, Mamo, Blain, Sundar, Kavya, Michel, Jeremy J
DOI: 10.1093/jamia/ocz124
In health informatics, there have been concerns with reuse of electronic health data for research, including potential bias from incorrect or incomplete outcome ascertainment. In this tutorial, we provide a concise review of predictive value-based quantitative bias analysis (QBA), which comprises epidemiologic methods that use estimates of data quality accuracy to quantify the bias caused by outcome misclassification.
Author(s): Newcomer, Sophia R, Xu, Stan, Kulldorff, Martin, Daley, Matthew F, Fireman, Bruce, Glanz, Jason M
DOI: 10.1093/jamia/ocz094
HIV infection risk can be estimated based on not only individual features but also social network information. However, there have been insufficient studies using n machine learning methods that can maximize the utility of such information. Leveraging a state-of-the-art network topology modeling method, graph convolutional networks (GCN), our main objective was to include network information for the task of detecting previously unknown HIV infections.
Author(s): Xiang, Yang, Fujimoto, Kayo, Schneider, John, Jia, Yuxi, Zhi, Degui, Tao, Cui
DOI: 10.1093/jamia/ocz070
Natural language processing (NLP) engines such as the clinical Text Analysis and Knowledge Extraction System are a solution for processing notes for research, but optimizing their performance for a clinical data warehouse remains a challenge. We aim to develop a high throughput NLP architecture using the clinical Text Analysis and Knowledge Extraction System and present a predictive model use case.
Author(s): Afshar, Majid, Dligach, Dmitriy, Sharma, Brihat, Cai, Xiaoyuan, Boyda, Jason, Birch, Steven, Valdez, Daniel, Zelisko, Suzan, Joyce, Cara, Modave, François, Price, Ron
DOI: 10.1093/jamia/ocz068