New approaches to cohort selection.
Author(s): Stubbs, Amber, Uzuner, Özlem
DOI: 10.1093/jamia/ocz174
Author(s): Stubbs, Amber, Uzuner, Özlem
DOI: 10.1093/jamia/ocz174
Electronic health records linked with biorepositories are a powerful platform for translational studies. A major bottleneck exists in the ability to phenotype patients accurately and efficiently. The objective of this study was to develop an automated high-throughput phenotyping method integrating International Classification of Diseases (ICD) codes and narrative data extracted using natural language processing (NLP).
Author(s): Liao, Katherine P, Sun, Jiehuan, Cai, Tianrun A, Link, Nicholas, Hong, Chuan, Huang, Jie, Huffman, Jennifer E, Gronsbell, Jessica, Zhang, Yichi, Ho, Yuk-Lam, Castro, Victor, Gainer, Vivian, Murphy, Shawn N, O'Donnell, Christopher J, Gaziano, J Michael, Cho, Kelly, Szolovits, Peter, Kohane, Isaac S, Yu, Sheng, Cai, Tianxi
DOI: 10.1093/jamia/ocz066
The goal of the 2018 n2c2 shared task on cohort selection for clinical trials (track 1) is to identify which patients meet the selection criteria for clinical trials. Cohort selection is a particularly demanding task to which natural language processing and deep learning can make a valuable contribution. Our goal is to evaluate several deep learning architectures to deal with this task.
Author(s): Segura-Bedmar, Isabel, Raez, Pablo
DOI: 10.1093/jamia/ocz139
We sought to demonstrate applicability of user stories, progressively elaborated by testable acceptance criteria, as lightweight requirements for agile development of clinical decision support (CDS).
Author(s): Kannan, Vaishnavi, Basit, Mujeeb A, Bajaj, Puneet, Carrington, Angela R, Donahue, Irma B, Flahaven, Emily L, Medford, Richard, Melaku, Tsedey, Moran, Brett A, Saldana, Luis E, Willett, Duwayne L, Youngblood, Josh E, Toomay, Seth M
DOI: 10.1093/jamia/ocz123
We sought to investigate the experiences of general practitioners (GPs) with an electronic decision support tool to reduce inappropriate polypharmacy in older patients (the PRIMA-eDS [Polypharmacy in chronic diseases: Reduction of Inappropriate Medication and Adverse drug events in older populations by electronic Decision Support] tool) in a multinational sample of GPs and to quantify the findings from a prior qualitative study on the PRIMA-eDS-tool.
Author(s): Rieckert, Anja, Teichmann, Anne-Lisa, Drewelow, Eva, Kriechmayr, Celine, Piccoliori, Giuliano, Woodham, Adrine, Sönnichsen, Andreas
DOI: 10.1093/jamia/ocz104
Complaints about electronic health records, including information overload, note bloat, and alert fatigue, are frequent topics of discussion. Despite substantial effort by researchers and industry, complaints continue noting serious adverse effects on patient safety and clinician quality of life. I believe solutions are possible if we can add information to the record that explains the "why" of a patient's care, such as relationships between symptoms, physical findings, diagnostic results, differential [...]
Author(s): Cimino, James J
DOI: 10.1093/jamia/ocz125
In this era of digitized health records, there has been a marked interest in using de-identified patient records for conducting various health related surveys. To assist in this research effort, we developed a novel clinical data representation model entitled medical knowledge-infused convolutional neural network (MKCNN), which is used for learning the clinical trial criteria eligibility status of patients to participate in cohort studies.
Author(s): Chen, Chi-Jen, Warikoo, Neha, Chang, Yung-Chun, Chen, Jin-Hua, Hsu, Wen-Lian
DOI: 10.1093/jamia/ocz128
Clinical decision support (CDS) systems are prevalent in electronic health records and drive many safety advantages. However, CDS systems can also cause unintended consequences. Monitoring programs focused on alert firing rates are important to detect anomalies and ensure systems are working as intended. Monitoring efforts do not generally include system load and time to generate decision support, which is becoming increasingly important as more CDS systems rely on external, web-based [...]
Author(s): Rubins, David, Wright, Adam, Alkasab, Tarik, Ledbetter, M Stephen, Miller, Amy, Patel, Rajesh, Wei, Nancy, Zuccotti, Gianna, Landman, Adam
DOI: 10.1093/jamia/ocz133
Despite the widespread and increasing use of electronic health records (EHRs), the quality of EHRs is problematic. Efforts have been made to address reasons for poor EHR documentation quality. Previous systematic reviews have assessed intervention effectiveness within the outpatient setting or paper documentation. The purpose of this systematic review was to assess the effectiveness of interventions seeking to improve EHR documentation within an inpatient setting.
Author(s): Wiebe, Natalie, Otero Varela, Lucia, Niven, Daniel J, Ronksley, Paul E, Iragorri, Nicolas, Quan, Hude
DOI: 10.1093/jamia/ocz081
We assessed whether machine learning can be utilized to allow efficient extraction of infectious disease activity information from online media reports.
Author(s): Feldman, Joshua, Thomas-Bachli, Andrea, Forsyth, Jack, Patel, Zaki Hasnain, Khan, Kamran
DOI: 10.1093/jamia/ocz112