On embedding-based automatic mapping of clinical classification system: handling linguistic variations and granular inconsistencies.
Mapping clinical classification systems, such as the International Classification of Diseases (ICD), is essential yet challenging. While the manual mapping method remains labor-intensive and lacks scalability, existing embedding-based automatic mapping methods, particularly those leveraging transformer-based pretrained encoders, encounter 2 persistent challenges: (1) linguistic variation and (2) varying granular details in clinical conditions.
Author(s): Purja Pun, Santosh, Obst, Oliver, Basilakis, Jim, Ginige, Jeewani Anupama
DOI: 10.1093/jamia/ocag004