Informatics and data science approaches address significant public health problems.
Author(s): Bakken, Suzanne
DOI: 10.1093/jamia/ocad076
Author(s): Bakken, Suzanne
DOI: 10.1093/jamia/ocad076
We aimed to develop a distributed, immutable, and highly available cross-cloud blockchain system to facilitate federated data analysis activities among multiple institutions.
Author(s): Kuo, Tsung-Ting, Pham, Anh, Edelson, Maxim E, Kim, Jihoon, Chan, Jason, Gupta, Yash, Ohno-Machado, Lucila, ,
DOI: 10.1093/jamia/ocad049
To develop a computable representation for medical evidence and to contribute a gold standard dataset of annotated randomized controlled trial (RCT) abstracts, along with a natural language processing (NLP) pipeline for transforming free-text RCT evidence in PubMed into the structured representation.
Author(s): Kang, Tian, Sun, Yingcheng, Kim, Jae Hyun, Ta, Casey, Perotte, Adler, Schiffer, Kayla, Wu, Mutong, Zhao, Yang, Moustafa-Fahmy, Nour, Peng, Yifan, Weng, Chunhua
DOI: 10.1093/jamia/ocad036
Transgender people have a right to be called by their chosen names. However, the current electronic health record (EHR)-even with dramatic changes in recent years-does not allow for proper documentation to accurately and sensitively capture the experiences of transgender patients. This article suggests that EHRs should be modified to allow for distinctions in legal and chosen name fields, recognize the wide-ranging experiences and needs of transgender patients, and promote inclusive [...]
Author(s): Grutman, Aurora J
DOI: 10.1093/jamia/ocad047
Clinical prediction models providing binary categorizations for clinical decision support require the selection of a probability threshold, or "cutpoint," to classify individuals. Existing cutpoint selection approaches typically optimize test-specific metrics, including sensitivity and specificity, but overlook the consequences of correct or incorrect classification. We introduce a new cutpoint selection approach considering downstream consequences using net monetary benefit (NMB) and through simulations compared it with alternative approaches in 2 use-cases: (i) [...]
Author(s): Parsons, Rex, Blythe, Robin, Cramb, Susanna M, McPhail, Steven M
DOI: 10.1093/jamia/ocad042
The use of controlled medications such as opioids, stimulants, anabolic steroids, depressants, and hallucinogens has led to an increase in addiction, overdose, and death. Given the high attributes of abuse and dependency, prescription drug monitoring programs (PDMPs) were introduced in the United States as a state-level intervention.
Author(s): Mehta, Shivani, Brown, William, Ferguson, Erin, Najera, James, Pantell, Matthew S
DOI: 10.1093/jamia/ocad053
Screening for chronic kidney disease (CKD) requires an estimated glomerular filtration rate (eGFR, mL/min/1.73 m2) from a blood sample and a proteinuria level from a urinalysis. We developed machine-learning models to detect CKD without blood collection, predicting an eGFR less than 60 (eGFR60 model) or 45 (eGFR45 model) using a urine dipstick test.
Author(s): Jang, Eun Chan, Park, Young Min, Han, Hyun Wook, Lee, Christopher Seungkyu, Kang, Eun Seok, Lee, Yu Ho, Nam, Sang Min
DOI: 10.1093/jamia/ocad051
Severe infection can lead to organ dysfunction and sepsis. Identifying subphenotypes of infected patients is essential for personalized management. It is unknown how different time series clustering algorithms compare in identifying these subphenotypes.
Author(s): Bhavani, Sivasubramanium V, Xiong, Li, Pius, Abish, Semler, Matthew, Qian, Edward T, Verhoef, Philip A, Robichaux, Chad, Coopersmith, Craig M, Churpek, Matthew M
DOI: 10.1093/jamia/ocad063
To study the coverage and challenges in mapping 3 national and international procedure coding systems to the International Classification of Health Interventions (ICHI).
Author(s): Fung, Kin Wah, Xu, Julia, Ameye, Filip, Burelle, Lisa, MacNeil, Janice
DOI: 10.1093/jamia/ocad064
We propose a system, quEHRy, to retrieve precise, interpretable answers to natural language questions from structured data in electronic health records (EHRs).
Author(s): Soni, Sarvesh, Datta, Surabhi, Roberts, Kirk
DOI: 10.1093/jamia/ocad050